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Topic: Question about annotateDiffreport and annotate function. (Read 5185 times) previous topic - next topic

Question about annotateDiffreport and annotate function.

Hi everybody,

My question is about the differences between the "annotateDiffreport" and "annotate" functions.

The following parameters are missing in annotateDiffreport:

-Parameter 'intval' in the groupFWHM step of annotateDiffreport.

annotateDiffreport function: xa <- groupFWHM(xa, perfwhm=perfwhm, sigma=sigma)

annotate function: xa  <- groupFWHM(xa, perfwhm=perfwhm, sigma=sigma, intval=intval)


-Parameter 'minfranc' and 'intval' in the findIsotopes step of  annotateDiffreport.

annotateDiffreport function:    xa <- findIsotopes(xa, maxcharge=maxcharge, maxiso=maxiso, ppm=ppm, mzabs=mzabs)

annotate function:    xa  <- findIsotopes(xa, maxcharge=maxcharge, maxiso=maxiso, ppm=ppm, mzabs=mzabs, intval=intval, minfrac=minfrac)



Is it normal that these parameters are missing in the annotateDiffreport? These parameters i guess, must affect a lot the results?

Thnak you very much by advance,

Bests regards,

Misharl.