Question about annotateDiffreport and annotate function. February 05, 2015, 08:01:02 AM Hi everybody,My question is about the differences between the "annotateDiffreport" and "annotate" functions.The following parameters are missing in annotateDiffreport:-Parameter 'intval' in the groupFWHM step of annotateDiffreport.annotateDiffreport function: xa <- groupFWHM(xa, perfwhm=perfwhm, sigma=sigma)annotate function: xa <- groupFWHM(xa, perfwhm=perfwhm, sigma=sigma, intval=intval)-Parameter 'minfranc' and 'intval' in the findIsotopes step of annotateDiffreport.annotateDiffreport function: xa <- findIsotopes(xa, maxcharge=maxcharge, maxiso=maxiso, ppm=ppm, mzabs=mzabs)annotate function: xa <- findIsotopes(xa, maxcharge=maxcharge, maxiso=maxiso, ppm=ppm, mzabs=mzabs, intval=intval, minfrac=minfrac)Is it normal that these parameters are missing in the annotateDiffreport? These parameters i guess, must affect a lot the results?Thnak you very much by advance,Bests regards,Misharl. Quote Selected