Re: Processing IMS data on a short gradient with XCMS
Reply #1 –
How did you convert the files? Do they show something sensible in for example MzMine?
You might want to strip the IMS data. I have no experience with this but if you are converting with msconvert the scanEvent filter might be what you need.
With Waters files I have also had good luck simpy deleting the IMS data file (the masswolf converter I was using would crash otherwise)...
A short gradient should make no difference as long as there is still a sensible number of scans per peak.