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XCMS - Cookbook / Waters raw folder calibration during mzXML conversion?

October 23, 2014, 06:34:51 AM

I have Waters raw folders that I converted to mzXML using Proteowizard. Viewing the files in Insilicos Viewer and later trying to run XCMS, I noticed the scans were separated by the experimental and calibrant peaks. Is there a way to, without using MassLynx (since I have no way to get it), properly calibrate and convert the files?