Protblem with retcor.orbiwarp November 20, 2013, 05:06:35 PM Hello,I have the following dataset named 's' :An "xcmsSet" object with 11 samplesTime range: 1-29867.1 seconds (0-497.8 minutes)Mass range: 380.0953-1997.3205 m/zPeaks: 1277863 (about 116169 per sample)Peak Groups: 58175 Sample classes: Invasive, Non_invasive Profile settings: method = bin step = 0.1Memory usage: 120 MBThis set has been grouped with bw=30and then I ran the following:s.rc<-retcor(s,method="obiwarp",plottype="deviation")and I get the following:center sample: BCa17-pT2 Processing: BCa09-pT2 Found gaps: cut scantime-vector at 3579.31 seconds Found gaps: cut scantime-vector at 2732.76 seconds BCa12-pT2 Found gaps: cut scantime-vector at 3555.44 seconds Found gaps: cut scantime-vector at 4085.53 seconds BCa13-pT2 Found gaps: cut scantime-vector at 3555.44 seconds Found gaps: cut scantime-vector at 3689.54 seconds BCa14-pT2 Found gaps: cut scantime-vector at 3555.44 seconds Found gaps: cut scantime-vector at 3647.25 seconds BCa15-pT2 Found gaps: cut scantime-vector at 3555.44 seconds Found gaps: cut scantime-vector at 3255.16 seconds BCa03-pTa Found gaps: cut scantime-vector at 3555.44 seconds Found gaps: cut scantime-vector at 3896.2 seconds BCa06-pTa Found gaps: cut scantime-vector at 3579.31 seconds Found gaps: cut scantime-vector at 2823.66 seconds BCa11-pTa Found gaps: cut scantime-vector at 3579.31 seconds Found gaps: cut scantime-vector at 3981.56 seconds BCa16-pTa Found gaps: cut scantime-vector at 3579.31 seconds Found gaps: cut scantime-vector at 3010.19 seconds BCa19-pTa Found gaps: cut scantime-vector at 3555.44 seconds Found gaps: cut scantime-vector at 1795.01 seconds Any idea what's wrong?Thanks in advance Quote Selected
Re: Protblem with retcor.orbiwarp Reply #1 – June 27, 2014, 04:17:14 AM Hello,I experimented exactly the same error.Any suggestion?Thanks Quote Selected