Scan time error June 19, 2014, 12:40:43 AM Dear all,Please help in sorting this error message:Error in xcmsRaw(arg$file, profmethod = params$profmethod, profparam = params$profparam, : Time for scan 23539 (1675.653) greater than scan 23540 (0)In addition: Warning message:In xcmsRaw(arg$file, profmethod = params$profmethod, profparam = params$profparam, : There are identical scantimes. Quote Selected
Re: Scan time error Reply #1 – June 19, 2014, 04:38:26 AM How did you convert the files?See http://metabolomics-forum.com/viewtopic.php?f=25&t=191 and viewtopic.php?f=26&t=359&p=1694. Quote Selected
Re: Scan time error Reply #2 – June 19, 2014, 05:38:38 AM Thanks for reply.I have converted CDF files using Xcalibar file converter tools.How can I check integrity of file conversion.Regards,Prasad Quote Selected
Re: Scan time error Reply #3 – June 19, 2014, 05:48:34 AM Just to add I am using Q-Exactive Plus raw data files for coversion to cdf using Xcalibar Quote Selected
Re: Scan time error Reply #4 – June 25, 2014, 06:13:28 AM Maybe run them through msconvert as described here: http://metabolomics-forum.com/viewtopic ... aa5af76370From the error message it seems Xcalibar inserts scans with time 0. Quote Selected