Re: Why can you not compare multiple cases to a single control in XCMS?
Reply #3 –
If I understand correctly you have 3 groups: A, B, C.
1) If you do A and C you get features found in A+C
2) If you do B and C you get features found in B+C
3) If you do A, B and C you get features found in A+B+C.
So why should your not get different peaktables in those 3 cases?