Waters raw folder calibration during mzXML conversion? October 23, 2014, 06:34:51 AM I have Waters raw folders that I converted to mzXML using Proteowizard. Viewing the files in Insilicos Viewer and later trying to run XCMS, I noticed the scans were separated by the experimental and calibrant peaks. Is there a way to, without using MassLynx (since I have no way to get it), properly calibrate and convert the files? Quote Selected