Re: Viewing mzXML files on MAC
Reply #2 –
Any of the open source programs will open up the mzXML, including xcms (note not xcms online). There is a list of softwares here:
http://masspec.scripps.edu/metabo_scien ... stools.php
I would also add openMS to this list. http://open-ms.sourceforge.net/
If you use xcms the command in R would be something like the following:
xr<-xcmsRaw("C:/Folder With my data/Name of my file.mzXML")
plotSurf(xr)
plotTIC(xr)
plotEIC(xr, m=c(200.1,200.2)
If you check out the xcms forum and look at the FAQ's there is some example code to do some overlays and other cool plots.